A Model Context Protocol server for interacting with CEDAR metadata repository
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# CEDAR MCP Server A Model Context Protocol (MCP) server for interacting with the CEDAR (Center for Expanded Data Annotation and Retrieval) metadata repository. ## 🚀 快速启动（推荐） ### 使用 UVX 一键启动 ```bash uvx bach-cedar-mcp ``` ### 在 Cursor/Cherry Studio 中配置 ```json { "mcpServers": { "cedar-mcp": { "command": "uvx", "args": ["bach-cedar-mcp"], "env": { "CEDAR_API_KEY": "<YOUR_CEDAR_API_KEY>", "BIOPORTAL_API_KEY": "<YOUR_BIOPORTAL_API_KEY>" } } } } ``` **PyPI 包地址**: https://pypi.org/project/bach-cedar-mcp/ --- ## Prerequisites Before using this MCP server, you'll need API keys from: ### CEDAR API Key - Go to [cedar.metadatacenter.org](https://cedar.metadatacenter.org) - Create an account or log in - Navigate to: Profile → API Key - Copy your API key ### BioPortal API Key - Go to [bioportal.bioontology.org](https://bioportal.bioontology.org) - Create an account or log in - Navigate to: Account Settings → API Key - Copy your API key ## Running the CEDAR MCP Server ### Option 1: Using UVX from PyPI (Recommended) Run directly without installation using `uvx`: ```bash uvx bach-cedar-mcp \ --cedar-api-key "your-cedar-key" \ --bioportal-api-key "your-bioportal-key" ``` ### Option 2: Install from PyPI Install using pip and run: ```bash # Install from PyPI pip install bach-cedar-mcp # Run the server bach-cedar-mcp \ --cedar-api-key "your-cedar-key" \ --bioportal-api-key "your-bioportal-key" ``` ### Option 3: Using Environment Variables Set environment variables instead of command-line arguments: ```bash # Set environment variables export CEDAR_API_KEY="your-cedar-key" export BIOPORTAL_API_KEY="your-bioportal-key" # Run with uvx uvx bach-cedar-mcp # Or if installed with pip bach-cedar-mcp ``` ### Option 4: Local Development Clone and run from source: ```bash # Clone the repository git clone https://github.com/BACH-AI-Tools/cedar-mcp.git cd cedar-mcp # Install dependencies and run uv run python…
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