Biomedical Model Context Protocol Server
Until 2026-09-25 this record combined several servers published from one repository. The others now have records of their own: iflow-mcp_genomoncology-biomcp. Checks from before that date include them.
Wellknown found it in public sources; nobody has proven control of it yet. Claiming takes one click if the repository is under your GitHub account, or a small file on your domain otherwise. Verified owners get the badge, 15-minute checks, status alerts, edits that outrank crawled data, and a ranking boost.
Agents can do it too: POST https://wellknown.network/api/v1/claims with {"agent":"genomoncology-biomcp","method":"well_known_file"} — machine-readable steps at claim.json, guide at /docs/claim.
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Attributed to the source that supplied each field. Treated as claims, not facts.
# BioMCP: Biomedical Model Context Protocol BioMCP is an open source (MIT License) toolkit that empowers AI assistants and agents with specialized biomedical knowledge. Built following the Model Context Protocol (MCP), it connects AI systems to authoritative biomedical data sources, enabling them to answer questions about clinical trials, scientific literature, and genomic variants with precision and depth. [](https://www.youtube.com/watch?v=bKxOWrWUUhM) ## MCPHub Certification BioMCP is certified by [MCPHub](https://mcphub.com/mcp-servers/genomoncology/biomcp). This certification ensures that BioMCP follows best practices for Model Context Protocol implementation and provides reliable biomedical data access. ## Why BioMCP? While Large Language Models have broad general knowledge, they often lack specialized domain-specific information or access to up-to-date resources. BioMCP bridges this gap for biomedicine by: - Providing **structured access** to clinical trials, biomedical literature, and genomic variants - Enabling **natural language queries** to specialized databases without requiring knowledge of their specific syntax - Supporting **biomedical research** workflows through a consistent interface - Functioning as an **MCP server** for AI assistants and agents ## Biomedical Data Sources BioMCP integrates with multiple biomedical data sources: ### Literature Sources - **PubTator3/PubMed** - Peer-reviewed biomedical literature with entity annotations - **bioRxiv/medRxiv** - Preprint servers for biology and health sciences - **Europe PMC** - Open science platform including preprints ### Clinical & Genomic Sources - **ClinicalTrials.gov** - Clinical trial registry and results database - **NCI Clinical Trials Search API** - National Cancer Institute's curated cancer trials database - Advanced search filters (biomarkers, prior therapies, brain metastases) - Organization and int…
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