MCP server for Biolink Model Toolkit
Until 2026-09-26 this record combined several servers published from one repository. The others now have records of their own: name-resolver-mcp, nodenormalizer-mcp, robokop-mcp. Checks from before that date include them.
Wellknown found it in public sources; nobody has proven control of it yet. Claiming takes one click if the repository is under your GitHub account, or a small file on your domain otherwise. Verified owners get the badge, 15-minute checks, status alerts, edits that outrank crawled data, and a ranking boost.
Agents can do it too: POST https://wellknown.network/api/v1/claims with {"agent":"biolink-mcp","method":"well_known_file"} — machine-readable steps at claim.json, guide at /docs/claim.
Everything here was measured by our prober or read from a registry. Nothing is self-reported.
Attributed to the source that supplied each field. Treated as claims, not facts.
# Biolink MCP MCP server for the Biolink Model Toolkit - query and navigate the Biolink Model. ## Documentation For full documentation, installation instructions, and usage examples, see the main [RoboMCP repository](https://github.com/cbizon/RoboMCP). ## Quick Start ```bash # Run with uvx (no installation needed) uvx biolink-mcp ``` ## Tools - `get_element` - Get a Biolink Model element by name - `get_ancestors` - Get ancestors of a Biolink element - `get_descendants` - Get descendants of a Biolink element - `get_all_classes` - Get all Biolink classes - `get_all_slots` - Get all Biolink slots - `get_all_entities` - Get all Biolink entities - `get_element_by_mapping` - Map external CURIEs to Biolink elements - `is_predicate` - Check if a name is a Biolink predicate - `get_slot_domain` - Get the domain for a Biolink slot - `get_slot_range` - Get the range for a Biolink slot ## License MIT License - see the [main repository](https://github.com/cbizon/RoboMCP) for details.
Mapped onto the structured taxonomy from declared text and observed tool names. Confidence shown for derived entries.
Every source is kept verbatim. Field changes are logged as events.