{"$schema":"https://wellknown.network/schemas/agent-record-v1.json","schemaVersion":"1","id":"ag_74868s6ter7e","handle":"plsdb-mcp","url":"https://wellknown.network/agents/plsdb-mcp","links":{"self":"https://wellknown.network/agents/plsdb-mcp/record.json","html":"https://wellknown.network/agents/plsdb-mcp","markdown":"https://wellknown.network/agents/plsdb-mcp/record.md","api":"https://wellknown.network/api/v1/agents/plsdb-mcp","status":"https://wellknown.network/api/v1/agents/plsdb-mcp/status","claim":"https://wellknown.network/agents/plsdb-mcp/claim","claimApi":"https://wellknown.network/api/v1/claims","claimDescriptor":"https://wellknown.network/agents/plsdb-mcp/claim.json","badge":"https://wellknown.network/agents/plsdb-mcp/badge.svg","openapi":"https://wellknown.network/openapi.json","history":"https://wellknown.network/api/v1/agents/plsdb-mcp/history","tools":"https://wellknown.network/api/v1/agents/plsdb-mcp/tools"},"ard":{"identifier":"urn:air::server:plsdb-mcp","type":"application/mcp-server-card+json"},"kind":"mcp_server","declared":{"name":"plsdb-mcp","summary":"Model Context Protocol server for interacting with the PLSDB (Plasmid Database) API","description":"PLSDB MCP Server\n\nModel Context Protocol server for interacting with the PLSDB (Plasmid Database) API.\nThis server provides tools to search, filter, and retrieve plasmid data from PLSDB.\n\n## Installation\n\n### From PyPI (Recommended)\n\n```bash\npip install plsdb-mcp\n```\n\n### From Source\n\n```bash\ngit clone <repository-url>\ncd PLSDBmcp\npip install -e .\n```\n\n## Usage\n\n### Command Line\n\nAfter installation, you can run the MCP server using:\n\n```bash\nplsdb-mcp\n```\n\n### MCP Configuration\n\nAdd this to your MCP configuration file:\n\n```json\n{\n  \"mcpServers\": {\n    \"plsdb\": {\n      \"command\": \"plsdb-mcp\",\n      \"args\": []\n    }\n  }\n}\n```\n\n## Available Tools\n\nThe PLSDB MCP server provides the following tools:\n\n### Plasmid Information\n- **get_plasmid_summary**: Get plasmid summary information for a given NUCCORE_ACC\n\n### FASTA Downloads\n- **start_fasta_download**: Start preparing FASTA download for multiple plasmid accessions\n- **get_fasta_download**: Get results from FASTA download job\n\n### Sequence Search\n- **start_sequence_search**: Start sequence search in PLSDB using various search methods\n- **get_sequence_search_results**: Get results from sequence search job\n\n### Filtering\n- **filter_plasmids_by_nuccore**: Filter PLSDB plasmids based on nuccore attributes\n- **filter_plasmids_by_biosample**: Filter PLSDB plasmids based on biosample attributes\n- **filter_plasmids_by_taxonomy**: Filter PLSDB plasmids based on taxonomy attributes\n\n## API Endpoints\n\nThe server connects to the PLSDB API at: `https://ccb-microbe.cs.uni-saarland.de/plsdb2025/api`\n\n## Requirements\n\n- Python 3.8 or higher\n- mcp >= 1.0.0\n- aiohttp >= 3.8.0\n\n## Development\n\n### Setup Development Environment\n\n```bash\ngit clone <repository-url>\ncd PLSDBmcp\npip install -e \".[dev]\"\n```\n\n### Running Tests\n\n```bash\npython -m pytest\n```\n\n### Building Package\n\n```bash\npython -m build\n```\n\n## Claude integration\n\ninlcude following in your Claude app:\n```json\n{\n  \"mcpServers\": {\n    \"plsdb\": {\n      \"command\": \"plsdb-mcp\",\n      …","publisher":{"name":"PLSDB MCP Team","url":null},"homepage":"https://github.com/matthiasflo/PLSDBmcp","repository":"https://github.com/matthiasflo/PLSDBmcp","version":"0.1.0","license":"MIT","protocols":["mcp"],"tags":["mcp"],"pricing":null,"endpoints":[{"url":"pypi:plsdb-mcp","type":"package_pypi","auth":null,"probeable":false}],"skills":null,"tools":null,"extra":null,"attribution":{"kind":"pypi","name":"pypi","license":"pypi","repoUrl":"pypi","summary":"pypi","version":"pypi","description":"pypi","homepageUrl":"pypi","publisherName":"pypi"}},"derived":{"capabilities":[{"slug":"dev.terminal","name":"Terminal & Shell","confidence":0.825,"provenance":"derived"},{"slug":"dev.version-control","name":"Version Control","confidence":0.791,"provenance":"derived"},{"slug":"dev.package-management","name":"Packages & Dependencies","confidence":0.768,"provenance":"derived"}],"categories":["dev"],"language":"en"},"observed":{"status":"unknown","statusReason":"Distributed as a package to run locally; no network endpoint to check.","lastOkAt":null,"lastProbedAt":null,"statusComputedAt":null,"reliability30d":null,"latestObservations":[],"tools":null,"package":{"name":"plsdb-mcp","registry":"pypi","observedAt":"2026-11-10T00:24:24.317Z","publishedAt":"2025-06-30T09:23:15.333623Z","latestVersion":"0.1.0"},"toolSurface":null,"endpointFacts":[]},"verification":{"claimed":false,"claimedAt":null,"proofs":[]},"provenance":{"sources":[{"source":"pypi","key":"plsdb-mcp","url":"https://pypi.org/project/plsdb-mcp/","firstSeenAt":"2026-09-10T10:23:16.182Z","fetchedAt":"2026-11-10T00:22:39.697Z","normalizedAt":"2026-11-10T00:22:39.697Z"}]},"firstSeenAt":"2026-09-10T10:23:16.182Z","updatedAt":"2026-11-10T00:24:24.317Z"}