{"$schema":"https://wellknown.network/schemas/agent-record-v1.json","schemaVersion":"1","id":"ag_5gsscq2abh3f","handle":"oak-mcp","url":"https://wellknown.network/agents/oak-mcp","links":{"self":"https://wellknown.network/agents/oak-mcp/record.json","html":"https://wellknown.network/agents/oak-mcp","markdown":"https://wellknown.network/agents/oak-mcp/record.md","api":"https://wellknown.network/api/v1/agents/oak-mcp","status":"https://wellknown.network/api/v1/agents/oak-mcp/status","claim":"https://wellknown.network/agents/oak-mcp/claim","claimApi":"https://wellknown.network/api/v1/claims","claimDescriptor":"https://wellknown.network/agents/oak-mcp/claim.json","badge":"https://wellknown.network/agents/oak-mcp/badge.svg","openapi":"https://wellknown.network/openapi.json","history":"https://wellknown.network/api/v1/agents/oak-mcp/history","tools":"https://wellknown.network/api/v1/agents/oak-mcp/tools"},"ard":{"identifier":"urn:air::server:oak-mcp","type":"application/mcp-server-card+json"},"kind":"mcp_server","declared":{"name":"oak-mcp","summary":"A model context protocol (MCP) to help agents interact with ontologies and the ontology access kit","description":"# oak_mcp\n\nA model context protocol (MCP) to help agents interact with ontologies and the ontology access kit\n\n## Quick Start\n\n```bash\n# Install dependencies and set up development environment\nmake dev\n\n# Run the MCP server\nmake run-server\n\n# Run tests\nmake test\n```\n\n## Installation\n\n```bash\n# Install in development mode (includes dependencies)\nmake dev-install\n```\n\n## Usage\n\n### Testing MCP Protocol\n\n```bash\nmake test-mcp\n```\n\n### Integration with AI Tools\n\n#### Claude Desktop\n\nAdd this to your Claude Desktop configuration file:\n\n```json\n{\n  \"mcpServers\": {\n    \"oak-mcp\": {\n      \"command\": \"uv\",\n      \"args\": [\"run\", \"python\", \"src/oak_mcp/main.py\"],\n      \"cwd\": \"/path/to/oak-mcp\"\n    }\n  }\n}\n```\n\n#### Claude Code\n\n```bash\nclaude mcp add -s project oak-mcp uv run python src/oak_mcp/main.py\n```\n\n#### Goose\n\n```bash\ngoose session --with-extension \"uv run python src/oak_mcp/main.py\"\n```\n\n## Development\n\n```bash\n# Full development setup\nmake dev\n\n# Run tests\nmake test\n\n# Check dependencies\nmake check-deps\n\n# Clean build artifacts\nmake clean\n```\n\n## License\n\nBSD-3-Clause","publisher":null,"homepage":"https://github.com/monarch-initiative/oak-mcp#readme","repository":"https://github.com/monarch-initiative/oak-mcp#readme","version":"0.1.16","license":"MIT","protocols":["mcp"],"tags":["bioinformatics","mcp","oak","ontology"],"pricing":null,"endpoints":[{"url":"pypi:oak-mcp","type":"package_pypi","auth":null,"probeable":false}],"skills":null,"tools":null,"extra":null,"attribution":{"kind":"pypi","name":"pypi","license":"pypi","repoUrl":"pypi","summary":"pypi","version":"pypi","description":"pypi","homepageUrl":"pypi"}},"derived":{"capabilities":[{"slug":"knowledge.knowledge-graph","name":"Knowledge Graphs","confidence":1,"provenance":"declared"}],"categories":["knowledge"],"language":"en"},"observed":{"status":"unknown","statusReason":"Distributed as a package to run locally; no network endpoint to check.","lastOkAt":null,"lastProbedAt":null,"statusComputedAt":null,"reliability30d":null,"latestObservations":[],"tools":null,"package":{"name":"oak-mcp","registry":"pypi","observedAt":"2026-10-28T18:28:16.116Z","publishedAt":"2025-07-07T21:56:29.435664Z","latestVersion":"0.1.16"},"toolSurface":null,"endpointFacts":[]},"verification":{"claimed":false,"claimedAt":null,"proofs":[]},"provenance":{"sources":[{"source":"pypi","key":"oak-mcp","url":"https://pypi.org/project/oak-mcp/","firstSeenAt":"2026-09-10T08:25:51.212Z","fetchedAt":"2026-10-28T18:26:30.817Z","normalizedAt":"2026-10-28T18:26:30.817Z"}]},"firstSeenAt":"2026-09-10T08:25:51.212Z","updatedAt":"2026-10-28T18:28:16.116Z"}