{"$schema":"https://wellknown.network/schemas/agent-record-v1.json","schemaVersion":"1","id":"ag_jmmrrerufujk","handle":"molcompose-mcp","url":"https://wellknown.network/agents/molcompose-mcp","links":{"self":"https://wellknown.network/agents/molcompose-mcp/record.json","html":"https://wellknown.network/agents/molcompose-mcp","markdown":"https://wellknown.network/agents/molcompose-mcp/record.md","api":"https://wellknown.network/api/v1/agents/molcompose-mcp","status":"https://wellknown.network/api/v1/agents/molcompose-mcp/status","claim":"https://wellknown.network/agents/molcompose-mcp/claim","claimApi":"https://wellknown.network/api/v1/claims","claimDescriptor":"https://wellknown.network/agents/molcompose-mcp/claim.json","badge":"https://wellknown.network/agents/molcompose-mcp/badge.svg","openapi":"https://wellknown.network/openapi.json","history":"https://wellknown.network/api/v1/agents/molcompose-mcp/history","tools":"https://wellknown.network/api/v1/agents/molcompose-mcp/tools"},"ard":{"identifier":"urn:air::server:molcompose-mcp","type":"application/mcp-server-card+json"},"kind":"mcp_server","declared":{"name":"molcompose-mcp","summary":"Agent-safe MCP server exposing MolCompose figure commands in UCSF ChimeraX","description":"# molcompose-mcp\n\n<p align=\"center\">\n  <a href=\"https://pypi.org/project/molcompose-mcp/\"><img alt=\"molcompose-mcp on PyPI\" src=\"https://img.shields.io/pypi/v/molcompose-mcp?color=12A08C&label=molcompose-mcp&logo=pypi&logoColor=white\"></a>\n  <a href=\"https://pypi.org/project/molcompose-mcp/\"><img alt=\"Supported Python versions\" src=\"https://img.shields.io/pypi/pyversions/molcompose-mcp?color=4477AA&logo=python&logoColor=white\"></a>\n  <a href=\"https://pepy.tech/projects/molcompose-mcp\"><img alt=\"PyPI downloads reported by Pepy\" src=\"https://api.pepy.tech/badge/molcompose-mcp\"></a>\n  <a href=\"https://github.com/ChiaChunL/MolCompose/actions/workflows/unit-tests.yml\"><img alt=\"CI\" src=\"https://github.com/ChiaChunL/MolCompose/actions/workflows/unit-tests.yml/badge.svg\"></a>\n  <a href=\"https://github.com/ChiaChunL/MolCompose/blob/main/LICENSE\"><img alt=\"BSD-3-Clause\" src=\"https://img.shields.io/badge/licence-BSD--3--Clause-7B7BD8\"></a>\n</p>\n\n**Download statistics:** [Totals (Pepy)](https://pepy.tech/projects/molcompose-mcp).\nThese are package downloads, not unique users or MCP calls.\n\nAn MCP stdio server for protein-interface analysis and molecular visualization\nin UCSF ChimeraX. Agents use the same MolCompose commands as the graphical panel.\n\n## Installation\n\nRequires Python 3.11+, ChimeraX 1.12 and the\n[MolCompose bundle](https://cxtoolshed.rbvi.ucsf.edu/apps/chimeraxmolcompose).\nInstall the latest published bridge:\n\n```bash\npython -m pip install --upgrade molcompose-mcp\n```\n\nThis README describes MCP **0.1.2** with bundle **0.1.3**, not yet published.\nFor this checkout, run `python -m pip install ./mcp` from the repository root\nand install the matching bundle using the\n[checkout instructions](https://github.com/ChiaChunL/MolCompose#this-checkout).\n\n## In the MolCompose Agent tab\n\nOpen **Tools → Structure Analysis → MolCompose**, then select the **Agent** tab.\nSelect an installed, signed-in Codex or Claude Code CLI, then ask a question.\nThe tab starts the local bridge …","publisher":null,"homepage":null,"repository":null,"version":"0.1.2","license":null,"protocols":["mcp"],"tags":["mcp"],"pricing":null,"endpoints":[{"url":"pypi:molcompose-mcp","type":"package_pypi","auth":null,"probeable":false}],"skills":null,"tools":null,"extra":null,"attribution":{"kind":"pypi","name":"pypi","summary":"pypi","version":"pypi","description":"pypi"}},"derived":{"capabilities":[{"slug":"dev.version-control","name":"Version Control","confidence":0.825,"provenance":"derived"},{"slug":"dev.package-management","name":"Packages & Dependencies","confidence":0.768,"provenance":"derived"}],"categories":["dev"],"language":"en"},"observed":{"status":"unknown","statusReason":"Distributed as a package to run locally; no network endpoint to check.","lastOkAt":null,"lastProbedAt":null,"statusComputedAt":null,"reliability30d":null,"latestObservations":[],"tools":null,"package":{"name":"molcompose-mcp","registry":"pypi","observedAt":"2026-11-09T20:24:08.547Z","publishedAt":"2026-09-08T13:05:46.780659Z","latestVersion":"0.1.2"},"toolSurface":null,"endpointFacts":[]},"verification":{"claimed":false,"claimedAt":null,"proofs":[]},"provenance":{"sources":[{"source":"pypi","key":"molcompose-mcp","url":"https://pypi.org/project/molcompose-mcp/","firstSeenAt":"2026-09-10T06:23:40.399Z","fetchedAt":"2026-11-09T20:22:34.619Z","normalizedAt":"2026-11-09T20:22:34.619Z"}]},"firstSeenAt":"2026-09-10T06:23:40.399Z","updatedAt":"2026-11-09T20:24:08.547Z"}