{"$schema":"https://wellknown.network/schemas/agent-record-v1.json","schemaVersion":"1","id":"ag_h249ey38r8u6","handle":"mcp-pyphotomol","url":"https://wellknown.network/agents/mcp-pyphotomol","links":{"self":"https://wellknown.network/agents/mcp-pyphotomol/record.json","html":"https://wellknown.network/agents/mcp-pyphotomol","markdown":"https://wellknown.network/agents/mcp-pyphotomol/record.md","api":"https://wellknown.network/api/v1/agents/mcp-pyphotomol","status":"https://wellknown.network/api/v1/agents/mcp-pyphotomol/status","claim":"https://wellknown.network/agents/mcp-pyphotomol/claim","claimApi":"https://wellknown.network/api/v1/claims","claimDescriptor":"https://wellknown.network/agents/mcp-pyphotomol/claim.json","badge":"https://wellknown.network/agents/mcp-pyphotomol/badge.svg","openapi":"https://wellknown.network/openapi.json","history":"https://wellknown.network/api/v1/agents/mcp-pyphotomol/history","tools":"https://wellknown.network/api/v1/agents/mcp-pyphotomol/tools"},"ard":{"identifier":"urn:air::server:mcp-pyphotomol","type":"application/mcp-server-card+json"},"kind":"mcp_server","declared":{"name":"mcp-pyphotomol","summary":"Analysis of mass photometry data","description":"# mcp_pyphotomol\n\n<!--\n[![BioContextAI - Registry](https://img.shields.io/badge/Registry-package?style=flat&label=BioContextAI&labelColor=%23fff&color=%233555a1&link=https%3A%2F%2Fbiocontext.ai%2Fregistry)](https://biocontext.ai/registry)\n-->\n\n[![Tests][badge-tests]][tests]\n[![Documentation][badge-docs]][documentation]\n\n[badge-tests]: https://img.shields.io/github/actions/workflow/status/osvalB/mcp_pyphotomol/test.yaml?branch=main\n[badge-docs]: https://img.shields.io/github/actions/workflow/status/osvalB/mcp_pyphotomol/docs.yaml?branch=main&label=docs\n\nThis repository contains a local MCP server for the analysis of mass photometry data.\nIt is based on the Python package [pyphotomol](https://github.com/osvalB/pyphotomol).\n\n## Video demonstration\n\nWatch a demonstration of the MCP server in action: [Video Demo](https://drive.google.com/file/d/1NQNWErh1wtd1XFVcd_Lsf-STHb5QfaaC/view?usp=share_link).\n\n## Getting started\n\nPlease refer to the [documentation]\n\n## Installation\n\nYou need to have Python 3.12 or newer installed on your system.\nIf you don't have Python installed, we recommend installing [uv][].\n\n### Run from the command line\n\n```bash\nuvx mcp_pyphotomol\n```\n\nBy default, plots and log files are saved in\n`~/user_data_mcp_pyphotomol/<YYYY-MM-DD>/`. To choose a different results\nfolder, set `RESULTS_DIR` before starting the server. This folder is\nwhere results are stored; each server run writes into a date-stamped subfolder.\n\n```bash\nRESULTS_DIR=~/Documents/user_data_mcp_pyphotomol uvx mcp_pyphotomol\n```\n\n### Configure an MCP client\n\nAdd the server to any MCP-compatible client that supports the `mcpServers`\nconfiguration format:\n\n```json\n{\n  \"mcpServers\": {\n    \"mcp_pyphotomol\": {\n      \"command\": \"uvx\",\n      \"args\": [\"mcp_pyphotomol\"],\n      \"env\": {\n        \"RESULTS_DIR\": \"/absolute/path/to/results-folder\"\n      }\n    }\n  }\n}\n```\n\nAfter updating the configuration, restart the MCP client so it can launch the\nserver.\n\n#### Claude Desktop\n\nIn Claude Desktop, open **S…","publisher":{"name":"Osvaldo Burastero","url":null},"homepage":"https://github.com/osvalB/mcp_pyphotomol/tree/main/docs","repository":"https://github.com/osvalB/mcp_pyphotomol/tree/main/docs","version":"1.1.1","license":"MIT License\n        \n        Copyright (c) 2026, Osvaldo Burast…","protocols":["mcp"],"tags":["mcp"],"pricing":null,"endpoints":[{"url":"pypi:mcp-pyphotomol","type":"package_pypi","auth":null,"probeable":false}],"skills":null,"tools":null,"extra":null,"attribution":{"kind":"pypi","name":"pypi","license":"pypi","repoUrl":"pypi","summary":"pypi","version":"pypi","description":"pypi","homepageUrl":"pypi","publisherName":"pypi"}},"derived":{"capabilities":[{"slug":"dev.version-control","name":"Version Control","confidence":0.825,"provenance":"derived"},{"slug":"dev.terminal","name":"Terminal & Shell","confidence":0.825,"provenance":"derived"}],"categories":["dev"],"language":"en"},"observed":{"status":"unknown","statusReason":"Distributed as a package to run locally; no network endpoint to check.","lastOkAt":null,"lastProbedAt":null,"statusComputedAt":null,"reliability30d":null,"latestObservations":[],"tools":null,"package":{"name":"mcp-pyphotomol","registry":"pypi","observedAt":"2026-10-28T12:23:05.614Z","publishedAt":"2026-09-01T10:18:00.138580Z","latestVersion":"1.1.1"},"toolSurface":null,"endpointFacts":[]},"verification":{"claimed":false,"claimedAt":null,"proofs":[]},"provenance":{"sources":[{"source":"pypi","key":"mcp-pyphotomol","url":"https://pypi.org/project/mcp-pyphotomol/","firstSeenAt":"2026-09-10T03:18:56.506Z","fetchedAt":"2026-10-28T12:22:16.941Z","normalizedAt":"2026-10-28T12:22:16.941Z"}]},"firstSeenAt":"2026-09-10T03:18:56.506Z","updatedAt":"2026-10-28T12:23:05.614Z"}