{"$schema":"https://wellknown.network/schemas/agent-record-v1.json","schemaVersion":"1","id":"ag_mwf4a6t9d46q","handle":"interopdb-mcp","url":"https://wellknown.network/agents/interopdb-mcp","links":{"self":"https://wellknown.network/agents/interopdb-mcp/record.json","html":"https://wellknown.network/agents/interopdb-mcp","markdown":"https://wellknown.network/agents/interopdb-mcp/record.md","api":"https://wellknown.network/api/v1/agents/interopdb-mcp","status":"https://wellknown.network/api/v1/agents/interopdb-mcp/status","claim":"https://wellknown.network/agents/interopdb-mcp/claim","claimApi":"https://wellknown.network/api/v1/claims","claimDescriptor":"https://wellknown.network/agents/interopdb-mcp/claim.json","badge":"https://wellknown.network/agents/interopdb-mcp/badge.svg","openapi":"https://wellknown.network/openapi.json","history":"https://wellknown.network/api/v1/agents/interopdb-mcp/history","tools":"https://wellknown.network/api/v1/agents/interopdb-mcp/tools"},"ard":{"identifier":"urn:air::server:interopdb-mcp","type":"application/mcp-server-card+json"},"kind":"mcp_server","declared":{"name":"interopdb-mcp","summary":"MCP server for Interop DB","description":"# interopdb-mcp\n    \nMCP server for the [Interop DB](https://interopdb-staging-f-ca.salmonpebble-cac1724c.northeurope.azurecontainerapps.io/), enabling LLMs like Claude Desktop to search and query genes, strains, and gene-strain pairs across multiple biological databases through natural language.\n             \nInterop DB is a federated registry that assigns unified identifiers to genes and strains across multiple biological databases. It integrates data from:    \n\n- **[ALEdb](https://aledb.org)** -- Adaptive Laboratory Evolution Database\n- **[BiGGr](https://biggr.org)** -- Knowledgebase of genome-scale metabolic network reconstructions\n- **[PanKB](https://pankb.org)** -- Pangenome Knowledge Base\n- **[PMkbase](https://www.pmkbase.com)** -- Phenotype MicroArray Knowledge Base\n\nInterop DB also has a [Python client and CLI](https://pypi.org/project/interopdb/) for programmatic use. This MCP package wraps the client using FastMCP. For developers who prefer coding directly, install the `interopdb` package instead.\n     \n## Installation\n\n```bash\npip install interopdb-mcp\n```\n\n## Usage with Claude Desktop\n\ninteropdb-mcp runs as a local MCP server over stdio hosted by Claude Desktop. First, find the absolute path to the installed package:   \n\n```bash\nwhich interopdb-mcp\n```     \nCopy and add the path to your `claude_desktop_config.json`:\n\n```json\n{\n  \"mcpServers\": {\n    \"interopdb-mcp\": {\n      \"command\": \"/full/path/to/interopdb-mcp\"\n    }\n  }\n}\n```\n\nThen restart Claude Desktop. You can now ask Claude questions like:\n\n- \"Find data for gene rpoB\"\n- \"Look up strain 511145 across all databases\"\n- \"What data is available for gene thrL in strain 511145?\"\n- \"Search for dnaA in the registry\"\n- \"What gene-strain relationships exist for GCF_031662355.1 in the registry?\"\n\n## Available Tools\n\n| Tool | Description |\n|---|---|\n| `get_gene` | Query a gene by local ID or UID |\n| `get_strain` | Query a strain by local ID or UID |\n| `get_pair` | Query a gene-strain pair by local ID |\n| `se…","publisher":null,"homepage":null,"repository":null,"version":"0.1.0","license":null,"protocols":["mcp"],"tags":["mcp"],"pricing":null,"endpoints":[{"url":"pypi:interopdb-mcp","type":"package_pypi","auth":null,"probeable":false}],"skills":null,"tools":null,"extra":null,"attribution":{"kind":"pypi","name":"pypi","summary":"pypi","version":"pypi","description":"pypi"}},"derived":{"capabilities":[{"slug":"data.database","name":"Databases","confidence":0.791,"provenance":"derived"},{"slug":"dev.package-management","name":"Packages & Dependencies","confidence":0.768,"provenance":"derived"}],"categories":["data","dev"],"language":"en"},"observed":{"status":"unknown","statusReason":"Distributed as a package to run locally; no network endpoint to check.","lastOkAt":null,"lastProbedAt":null,"statusComputedAt":null,"reliability30d":null,"latestObservations":[],"tools":null,"package":{"name":"interopdb-mcp","registry":"pypi","observedAt":"2026-09-15T21:22:03.741Z","publishedAt":"2026-04-06T22:56:53.390861Z","latestVersion":"0.1.0"},"toolSurface":null,"endpointFacts":[]},"verification":{"claimed":false,"claimedAt":null,"proofs":[]},"provenance":{"sources":[{"source":"pypi","key":"interopdb-mcp","url":"https://pypi.org/project/interopdb-mcp/","firstSeenAt":"2026-09-09T22:21:50.161Z","fetchedAt":"2026-09-15T21:20:10.727Z","normalizedAt":"2026-09-15T21:20:10.727Z"}]},"firstSeenAt":"2026-09-09T22:21:50.161Z","updatedAt":"2026-09-15T21:22:03.741Z"}