{"$schema":"https://wellknown.network/schemas/agent-record-v1.json","schemaVersion":"1","id":"ag_ckwjpshy5whq","handle":"iflow-mcp-scmcp","url":"https://wellknown.network/agents/iflow-mcp-scmcp","links":{"self":"https://wellknown.network/agents/iflow-mcp-scmcp/record.json","html":"https://wellknown.network/agents/iflow-mcp-scmcp","markdown":"https://wellknown.network/agents/iflow-mcp-scmcp/record.md","api":"https://wellknown.network/api/v1/agents/iflow-mcp-scmcp","status":"https://wellknown.network/api/v1/agents/iflow-mcp-scmcp/status","claim":"https://wellknown.network/agents/iflow-mcp-scmcp/claim","claimApi":"https://wellknown.network/api/v1/claims","claimDescriptor":"https://wellknown.network/agents/iflow-mcp-scmcp/claim.json","badge":"https://wellknown.network/agents/iflow-mcp-scmcp/badge.svg","openapi":"https://wellknown.network/openapi.json","history":"https://wellknown.network/api/v1/agents/iflow-mcp-scmcp/history","tools":"https://wellknown.network/api/v1/agents/iflow-mcp-scmcp/tools"},"ard":{"identifier":"urn:air::server:iflow-mcp-scmcp","type":"application/mcp-server-card+json"},"kind":"mcp_server","declared":{"name":"iflow-mcp_scmcp","summary":"An MCP server for scRNA-Seq analysis with natural language!","description":"> ⚠️ **Important Notice**: This repository is no longer maintained. Please visit [SCMCPHub](https://github.com/scmcphub) for the latest version of MCP servers.\n\n# SCMCP\n\nAn MCP server for scRNA-Seq analysis  with natural language!\n\n## 🪩 What can it do?\n\n- IO module like read and write scRNA-Seq data with natural language\n- Preprocessing module,like filtering, quality control, normalization, scaling, highly-variable genes, PCA, Neighbors,...\n- Tool module, like clustering, differential expression etc.\n- Plotting module, like violin, heatmap, dotplot\n- cell-cell communication analysis\n\n## ❓ Who is this for?\n\n- Anyone who wants to do scRNA-Seq analysis natural language!\n- Agent developers who want to call scanpy's functions for their applications\n\n## 🌐 Where to use it?\n\nYou can use scmcp in most AI clients, plugins, or agent frameworks that support the MCP:\n\n- AI clients, like Cherry Studio\n- Plugins, like Cline\n- Agent frameworks, like Agno \n\n## 🎬 Demo\n\nA demo showing scRNA-Seq cell cluster analysis in a AI client Cherry Studio using natural language based on scmcp\n\nhttps://github.com/user-attachments/assets/93a8fcd8-aa38-4875-a147-a5eeff22a559\n\n## 🏎️ Quickstart\n\n### Install\n\nInstall from PyPI\n```\npip install scmcp\n```\nyou can test it by running\n```\nscmcp run\n```\n\n#### run scnapy-server locally\nRefer to the following configuration in your MCP client:\n\n```\n\"mcpServers\": {\n  \"scmcp\": {\n    \"command\": \"scmcp\",\n    \"args\": [\n      \"run\"\n    ]\n  }\n}\n```\n\n#### run scnapy-server remotely\nRefer to the following configuration in your MCP client:\n\nrun it in your server\n```\nscmcp run --transport sse --port 8000\n```\n\nThen configure your MCP client, like this:\n```\nhttp://localhost:8000/sse\n```\n\n## 🤝 Contributing\n\nIf you have any questions, welcome to submit an issue, or contact me(hsh-me@outlook.com). Contributions to the code are also welcome!","publisher":null,"homepage":null,"repository":null,"version":"0.1.3","license":"BSD 3-Clause License  Copyright (c) 2025, Shenghui  Redistribut…","protocols":["mcp"],"tags":["mcp"],"pricing":null,"endpoints":[{"url":"pypi:iflow-mcp_scmcp","type":"package_pypi","auth":null,"probeable":false}],"skills":null,"tools":null,"extra":null,"attribution":{"kind":"pypi","name":"pypi","license":"pypi","summary":"pypi","version":"pypi","description":"pypi"}},"derived":{"capabilities":[{"slug":"dev.version-control","name":"Version Control","confidence":0.825,"provenance":"derived"}],"categories":["dev"],"language":"en"},"observed":{"status":"unknown","statusReason":"Distributed as a package to run locally; no network endpoint to check.","lastOkAt":null,"lastProbedAt":null,"statusComputedAt":null,"reliability30d":null,"latestObservations":[],"tools":null,"package":{"name":"iflow-mcp_scmcp","registry":"pypi","observedAt":"2026-09-15T20:21:18.454Z","publishedAt":"2025-11-10T07:41:47.261076Z","latestVersion":"0.1.3"},"toolSurface":null,"endpointFacts":[]},"verification":{"claimed":false,"claimedAt":null,"proofs":[]},"provenance":{"sources":[{"source":"pypi","key":"iflow-mcp_scmcp","url":"https://pypi.org/project/iflow-mcp_scmcp/","firstSeenAt":"2026-09-09T21:23:39.289Z","fetchedAt":"2026-09-15T20:19:21.669Z","normalizedAt":"2026-09-15T20:19:21.669Z"}]},"firstSeenAt":"2026-09-09T21:23:39.289Z","updatedAt":"2026-09-15T20:21:18.454Z"}