{"$schema":"https://wellknown.network/schemas/agent-record-v1.json","schemaVersion":"1","id":"ag_sz8r7yqt3hht","handle":"boltz-mcp","url":"https://wellknown.network/agents/boltz-mcp","links":{"self":"https://wellknown.network/agents/boltz-mcp/record.json","html":"https://wellknown.network/agents/boltz-mcp","markdown":"https://wellknown.network/agents/boltz-mcp/record.md","api":"https://wellknown.network/api/v1/agents/boltz-mcp","status":"https://wellknown.network/api/v1/agents/boltz-mcp/status","claim":"https://wellknown.network/agents/boltz-mcp/claim","claimApi":"https://wellknown.network/api/v1/claims","claimDescriptor":"https://wellknown.network/agents/boltz-mcp/claim.json","badge":"https://wellknown.network/agents/boltz-mcp/badge.svg","openapi":"https://wellknown.network/openapi.json","history":"https://wellknown.network/api/v1/agents/boltz-mcp/history","tools":"https://wellknown.network/api/v1/agents/boltz-mcp/tools"},"ard":{"identifier":"urn:air::server:boltz-mcp","type":"application/mcp-server-card+json"},"kind":"mcp_server","declared":{"name":"boltz-mcp","summary":"MCP for Boltz-2 model inference","description":"# boltz-mcp\n\nMCP (Model Context Protocol) server for Boltz-2 protein structure prediction model.\n\n## Overview\n\nThis MCP server provides tools for protein structure prediction using the state-of-the-art Boltz-2 model. It enables you to:\n\n- Predict single protein structures from amino acid sequences\n- Predict protein complexes and multimers\n- Predict protein-ligand interactions\n- Use custom multiple sequence alignments (MSAs)\n- Handle cyclic peptides\n- Configure various prediction parameters\n\n## Features\n\n### Tools Available\n\n1. **`boltz_predict_structure`** - Main prediction tool with full configuration options\n2. **`boltz_predict_from_sequences`** - Simple sequence-to-structure prediction\n3. **`boltz_check_status`** - Check Boltz installation status\n4. **`boltz_get_examples`** - Get example configurations for different prediction types\n\n### Resources Available\n\n- **`resource://boltz-usage-guide`** - Comprehensive usage guide and documentation\n\n## Installation\n\n### Prerequisites\n\n#### System Dependencies\n\nBefore installing the Python packages, you need to install system dependencies required for building scientific Python packages:\n\n**Ubuntu/Debian:**\n```bash\nsudo apt update\nsudo apt install -y cmake build-essential gfortran\n```\n\n**CentOS/RHEL/Fedora:**\n```bash\n# For CentOS/RHEL\nsudo yum install cmake gcc-gfortran gcc-c++ make\n# For Fedora\nsudo dnf install cmake gcc-gfortran gcc-c++ make\n```\n\n**macOS:**\n```bash\n# Install Xcode Command Line Tools if not already installed\nxcode-select --install\n# Install gfortran (via Homebrew)\nbrew install gcc cmake\n```\n\n**Note:** These system dependencies are required because some Python packages (like SciPy) need to be compiled from source when using uv, and they require:\n- `cmake`: For building dm-tree and other native extensions\n- `gfortran`: For building SciPy from source\n- `build-essential`/`gcc-c++`: For general C/C++ compilation\n\n#### Python Dependencies\n\n1. Install the Boltz-2 model:\n   ```bash\n   pip install boltz\n   ```\n\n2…","publisher":null,"homepage":null,"repository":null,"version":"0.1.2","license":null,"protocols":["mcp"],"tags":["mcp"],"pricing":null,"endpoints":[{"url":"pypi:boltz-mcp","type":"package_pypi","auth":null,"probeable":false}],"skills":null,"tools":null,"extra":null,"attribution":{"kind":"pypi","name":"pypi","summary":"pypi","version":"pypi","description":"pypi"}},"derived":{"capabilities":[{"slug":"dev.package-management","name":"Packages & Dependencies","confidence":0.859,"provenance":"derived"},{"slug":"dev.terminal","name":"Terminal & Shell","confidence":0.825,"provenance":"derived"}],"categories":["dev"],"language":"en"},"observed":{"status":"unknown","statusReason":"Distributed as a package to run locally; no network endpoint to check.","lastOkAt":null,"lastProbedAt":null,"statusComputedAt":null,"reliability30d":null,"latestObservations":[],"tools":null,"package":{"name":"boltz-mcp","registry":"pypi","observedAt":"2026-11-09T00:27:28.398Z","publishedAt":"2025-06-27T16:11:29.345644Z","latestVersion":"0.1.2"},"toolSurface":null,"endpointFacts":[]},"verification":{"claimed":false,"claimedAt":null,"proofs":[]},"provenance":{"sources":[{"source":"pypi","key":"boltz-mcp","url":"https://pypi.org/project/boltz-mcp/","firstSeenAt":"2026-09-09T10:27:36.188Z","fetchedAt":"2026-11-09T00:26:23.715Z","normalizedAt":"2026-11-09T00:26:23.715Z"}]},"firstSeenAt":"2026-09-09T10:27:36.188Z","updatedAt":"2026-11-09T00:27:28.398Z"}