{"$schema":"https://wellknown.network/schemas/agent-record-v1.json","schemaVersion":"1","id":"ag_mdwrvgbkdvxr","handle":"biomcp-server","url":"https://wellknown.network/agents/biomcp-server","links":{"self":"https://wellknown.network/agents/biomcp-server/record.json","html":"https://wellknown.network/agents/biomcp-server","markdown":"https://wellknown.network/agents/biomcp-server/record.md","api":"https://wellknown.network/api/v1/agents/biomcp-server","status":"https://wellknown.network/api/v1/agents/biomcp-server/status","claim":"https://wellknown.network/agents/biomcp-server/claim","claimApi":"https://wellknown.network/api/v1/claims","claimDescriptor":"https://wellknown.network/agents/biomcp-server/claim.json","badge":"https://wellknown.network/agents/biomcp-server/badge.svg","openapi":"https://wellknown.network/openapi.json","history":"https://wellknown.network/api/v1/agents/biomcp-server/history","tools":"https://wellknown.network/api/v1/agents/biomcp-server/tools"},"ard":{"identifier":"urn:air::server:biomcp-server","type":"application/mcp-server-card+json"},"kind":"mcp_server","declared":{"name":"biomcp-server","summary":"BioMCP — 生物信息学 MCP 服务器：覆盖 43 个公开学术数据库 83 个工具，让任意 AI 助手检索 PubMed、BLAST、PDB、UniProt、Ensembl、STRING、InterPro、PubChem、KEGG、变异、人群频率、甲基化 QTL、表观遗传、组织表达、药物靶点、糖组学、代谢组学、脂质组学、微生物组、核酸档案、基因组组装、植物基因、蛋白质组学、模式生物、智能分析、诚实检查与跨库交叉验证。","description":"# BioMCP — 生物信息学 MCP 服务器 / Bioinformatics MCP Server\n\n**BioMCP** is an open-source **MCP server** that connects any AI assistant directly to **43 open bioinformatics databases** — zero config, no API keys. Literature, sequences, BLAST, structures, enrichment, annotations, genomes, interactions, pathways, variants, population frequencies, methylation QTLs, tissue expression, drug targets, compounds, single-cell, glycomics, metabolomics, lipidomics, microbiome, plants, model organisms, proteomics and more.\n\nBioMCP 是一个开源的 **MCP 服务器**，让任意 AI 助手**零配置直连 43 个公开生物数据库**——文献、序列、比对、结构、富集、注释、基因组、互作、通路、变异、人群频率、甲基化 QTL、表观遗传、组织表达、药物靶点、化合物、单细胞、糖组学、代谢组学、脂质组学、微生物组、植物、模式生物、蛋白质组学等全流程。\n\n[![MCP](https://img.shields.io/badge/MCP-Server-7c5cff?style=flat-square)](https://modelcontextprotocol.io)\n[![PyPI](https://img.shields.io/pypi/v/biomcp-server?style=flat-square&logo=pypi&logoColor=white)](https://pypi.org/project/biomcp-server/)\n[![Tools](https://img.shields.io/badge/Tools-83-0ea5e9?style=flat-square)](https://github.com/qgeng1465/bio-mcp)\n[![Databases](https://img.shields.io/badge/Databases-43-22c55e?style=flat-square)](https://github.com/qgeng1465/bio-mcp)\n[![Python](https://img.shields.io/badge/Python-3.10%2B-2ea44f?style=flat-square)](https://www.python.org)\n[![License](https://img.shields.io/badge/License-Dual%20License-blue?style=flat-square)](LICENSE)\n[![Platform](https://img.shields.io/badge/Platform-win%20%7C%20mac%20%7C%20linux-lightgrey?style=flat-square)](https://github.com/qgeng1465/bio-mcp)\n\n---\n\n## 特性 / Features\n\n**标准 MCP 协议** / Standard MCP protocol — Based on official MCP SDK with stdio transport, compatible with all MCP clients\n基于官方 MCP SDK，stdio 传输，兼容所有 MCP 客户端\n\n**83 个工具 · 43 个数据库** / 83 tools · 43 databases — Covers literature → sequences → structures → functions → interactions → pathways → variants → population frequency → methylation → tissue expression → drug targets → drugs → single-cell → glycomics → metabolomics → lipidomics → microbiome → plants → model orga…","publisher":{"name":"qgeng1465","url":null},"homepage":"https://github.com/qgeng1465/bio-mcp#readme","repository":"https://github.com/qgeng1465/bio-mcp#readme","version":"0.7.0","license":"Dual License: MIT (academic) + commercial authorization required","protocols":["mcp"],"tags":["mcp","bioinformatics","pubmed","ncbi","blast","pdb","uniprot","ensembl","string-db","kegg","gwas","interpro","pubchem","glycomics","metabolomics","lipidomics","microbiome","reactome","openalex","ena"],"pricing":null,"endpoints":[{"url":"pypi:biomcp-server","type":"package_pypi","auth":null,"probeable":false}],"skills":null,"tools":null,"extra":null,"attribution":{"kind":"pypi","name":"pypi","license":"pypi","repoUrl":"pypi","summary":"pypi","version":"pypi","description":"pypi","homepageUrl":"pypi","publisherName":"pypi"}},"derived":{"capabilities":[{"slug":"research.academic","name":"Academic Research","confidence":1,"provenance":"declared"}],"categories":["research"],"language":"en"},"observed":{"status":"unknown","statusReason":"Distributed as a package to run locally; no network endpoint to check.","lastOkAt":null,"lastProbedAt":null,"statusComputedAt":null,"reliability30d":null,"latestObservations":[],"tools":null,"package":{"name":"biomcp-server","registry":"pypi","observedAt":"2026-11-02T22:25:02.690Z","publishedAt":"2026-09-01T10:13:21.314110Z","latestVersion":"0.7.0"},"toolSurface":null,"endpointFacts":[]},"verification":{"claimed":false,"claimedAt":null,"proofs":[]},"provenance":{"sources":[{"source":"pypi","key":"biomcp-server","url":"https://pypi.org/project/biomcp-server/","firstSeenAt":"2026-09-09T10:27:11.611Z","fetchedAt":"2026-11-02T22:24:13.029Z","normalizedAt":"2026-11-02T22:24:13.029Z"}]},"firstSeenAt":"2026-09-09T10:27:11.611Z","updatedAt":"2026-11-02T22:25:02.690Z"}