{"$schema":"https://wellknown.network/schemas/agent-record-v1.json","schemaVersion":"1","id":"ag_gguz6jevp23h","handle":"bioinformatics-mcp-server","url":"https://wellknown.network/agents/bioinformatics-mcp-server","links":{"self":"https://wellknown.network/agents/bioinformatics-mcp-server/record.json","html":"https://wellknown.network/agents/bioinformatics-mcp-server","markdown":"https://wellknown.network/agents/bioinformatics-mcp-server/record.md","api":"https://wellknown.network/api/v1/agents/bioinformatics-mcp-server","status":"https://wellknown.network/api/v1/agents/bioinformatics-mcp-server/status","claim":"https://wellknown.network/agents/bioinformatics-mcp-server/claim","claimApi":"https://wellknown.network/api/v1/claims","claimDescriptor":"https://wellknown.network/agents/bioinformatics-mcp-server/claim.json","badge":"https://wellknown.network/agents/bioinformatics-mcp-server/badge.svg","openapi":"https://wellknown.network/openapi.json","history":"https://wellknown.network/api/v1/agents/bioinformatics-mcp-server/history","tools":"https://wellknown.network/api/v1/agents/bioinformatics-mcp-server/tools"},"ard":{"identifier":"urn:air::server:bioinformatics-mcp-server","type":"application/mcp-server-card+json"},"kind":"mcp_server","declared":{"name":"bioinformatics-mcp-server","summary":"MCP-Server für Bioinformatik-Daten — Gene, Proteine, PubMed-Literatur, Varianten und Sequenzen via NCBI & UniProt","description":"# bioinformatics-mcp-server\n\nMCP-Server für Bioinformatik- und Life-Science-Daten. Gibt AI-Agents Zugriff auf NCBI Gene, UniProt, PubMed und ClinVar — komplett kostenlos ohne API-Key.\n\n## Tools\n\n| Tool | Beschreibung |\n|------|-------------|\n| `search_genes` | Gen-Suche in NCBI Gene Database (Symbol, Name, Funktion) |\n| `get_gene_details` | Detailinfos zu einem Gen via NCBI Gene ID |\n| `search_clinvar_variants` | Klinische Varianten/Mutationen via NCBI ClinVar |\n| `get_taxonomy` | Taxonomische Klassifikation via NCBI Taxonomy |\n| `search_proteins` | Protein-Suche in UniProt |\n| `get_protein_details` | Protein-Details via UniProt Accession |\n| `get_ncbi_sequence` | DNA/Protein-Sequenzen aus NCBI (FASTA/GenBank) |\n| `search_pubmed` | Literatur-Suche in PubMed |\n| `get_pubmed_abstract` | Vollständiger Abstract eines PubMed-Artikels |\n| `get_pubmed_citations` | Artikel die eine Publikation zitieren |\n\n## Installation\n\n```bash\npip install bioinformatics-mcp-server\n```\n\n## Konfiguration (Claude Desktop)\n\n```json\n{\n  \"mcpServers\": {\n    \"bioinformatics\": {\n      \"command\": \"bioinformatics-server\"\n    }\n  }\n}\n```\n\n## Beispiele\n\n```\n# Gen-Suche\nsearch_genes(\"BRCA1\", organism=\"human\")\nsearch_genes(\"p53\", organism=\"mouse\")\n\n# Klinische Varianten\nsearch_clinvar_variants(\"CFTR\", significance=\"pathogenic\")\n\n# Protein-Lookup\nsearch_proteins(\"insulin receptor\", organism=\"human\")\nget_protein_details(\"P06213\")\n\n# DNA-Sequenz abrufen\nget_ncbi_sequence(\"NM_007294\", database=\"nucleotide\")\n\n# Literatur\nsearch_pubmed(\"CRISPR gene therapy cancer 2025\", max_results=5)\nget_pubmed_abstract(\"33461210\")\n```\n\n## APIs\n\n- **NCBI E-utilities** — Gene, ClinVar, Taxonomy, PubMed, Sequenzen (kostenlos, 3 req/s)\n- **UniProt REST API** — Proteine, Sequenzen, Funktionen (kostenlos, unbegrenzt)\n\nKein API-Key erforderlich.\n\n## Lizenz\n\nMIT","publisher":{"name":"AiAgentKarl","url":null},"homepage":"https://github.com/AiAgentKarl/bioinformatics-mcp-server","repository":"https://github.com/AiAgentKarl/bioinformatics-mcp-server","version":"0.1.0","license":null,"protocols":["mcp"],"tags":["ai-agent","bioinformatics","genes","genomics","life-science","mcp","ncbi","proteins","pubmed","uniprot"],"pricing":null,"endpoints":[{"url":"pypi:bioinformatics-mcp-server","type":"package_pypi","auth":null,"probeable":false}],"skills":null,"tools":null,"extra":null,"attribution":{"kind":"pypi","name":"pypi","repoUrl":"pypi","summary":"pypi","version":"pypi","description":"pypi","homepageUrl":"pypi","publisherName":"pypi"}},"derived":{"capabilities":[{"slug":"research.academic","name":"Academic Research","confidence":1,"provenance":"declared"}],"categories":["research"],"language":"de"},"observed":{"status":"unknown","statusReason":"Distributed as a package to run locally; no network endpoint to check.","lastOkAt":null,"lastProbedAt":null,"statusComputedAt":null,"reliability30d":null,"latestObservations":[],"tools":null,"package":{"name":"bioinformatics-mcp-server","registry":"pypi","observedAt":"2026-11-02T22:25:02.444Z","publishedAt":"2026-03-23T08:34:29.369549Z","latestVersion":"0.1.0"},"toolSurface":null,"endpointFacts":[]},"verification":{"claimed":false,"claimedAt":null,"proofs":[]},"provenance":{"sources":[{"source":"pypi","key":"bioinformatics-mcp-server","url":"https://pypi.org/project/bioinformatics-mcp-server/","firstSeenAt":"2026-09-09T10:27:10.861Z","fetchedAt":"2026-11-02T22:24:12.413Z","normalizedAt":"2026-11-02T22:24:12.413Z"}]},"firstSeenAt":"2026-09-09T10:27:10.861Z","updatedAt":"2026-11-02T22:25:02.444Z"}