{"$schema":"https://wellknown.network/schemas/agent-record-v1.json","schemaVersion":"1","id":"ag_jnww44cpx7pk","handle":"anndata-mcp","url":"https://wellknown.network/agents/anndata-mcp","links":{"self":"https://wellknown.network/agents/anndata-mcp/record.json","html":"https://wellknown.network/agents/anndata-mcp","markdown":"https://wellknown.network/agents/anndata-mcp/record.md","api":"https://wellknown.network/api/v1/agents/anndata-mcp","status":"https://wellknown.network/api/v1/agents/anndata-mcp/status","claim":"https://wellknown.network/agents/anndata-mcp/claim","claimApi":"https://wellknown.network/api/v1/claims","claimDescriptor":"https://wellknown.network/agents/anndata-mcp/claim.json","badge":"https://wellknown.network/agents/anndata-mcp/badge.svg","openapi":"https://wellknown.network/openapi.json"},"ard":{"identifier":"urn:air::server:anndata-mcp","type":"application/mcp-server-card+json"},"kind":"mcp_server","declared":{"name":"anndata-mcp","summary":"Allows to retrieve information about an AnnData object via MCP","description":"# AnnData MCP\n\n[![BioContextAI - Registry](https://img.shields.io/badge/Registry-package?style=flat&label=BioContextAI&labelColor=%23fff&color=%233555a1&link=https%3A%2F%2Fbiocontext.ai%2Fregistry)](https://biocontext.ai/registry)\n[![Tests][badge-tests]][tests]\n[![Documentation][badge-docs]][documentation]\n\n[badge-tests]: https://img.shields.io/github/actions/workflow/status/biocontext-ai/anndata-mcp/test.yaml?branch=main\n[badge-docs]: https://img.shields.io/readthedocs/anndata-mcp\n\nAllows to retrieve information about an AnnData object via MCP using the `read_lazy` function from `anndata`.\n\n## Getting started\n\nPlease refer to the [documentation][],\nin particular, the [API documentation][].\n\nYou can also find the project on [BioContextAI](https://biocontext.ai), the community-hub for biomedical MCP servers: [anndata-mcp on BioContextAI](https://biocontext.ai/registry/biocontext-ai/anndata-mcp).\n\n## Installation\n\nYou need to have Python 3.11 or newer installed on your system.\nIf you don't have Python installed, we recommend installing [uv][].\n\nThere are several alternative options to install anndata-mcp:\n\n1. Use `uvx` to run it immediately:\n\n```bash\nuvx anndata-mcp\n```\n\n2. Include it in one of various clients that supports the `mcp.json` standard, please use:\n\n```json\n{\n  \"mcpServers\": {\n    \"anndata-mcp\": {\n      \"command\": \"uvx\",\n      \"args\": [\"anndata-mcp\"]\n    }\n  }\n}\n```\n\n3. Install it through `pip`:\n\n```bash\npip install --user anndata-mcp\n```\n\n4. Install the latest development version:\n\n```bash\npip install git+https://github.com/biocontext-ai/anndata-mcp.git@main\n```\n\n## Contact\n\nIf you found a bug, please use the [issue tracker][].\n\n## Citation\n\nIf this MCP server is useful to your research, please cite the `BioContextAI` and the `anndata` publications:\n\n```bibtex\n@article{BioContext_AI_Kuehl_Schaub_2025,\n  title={BioContextAI is a community hub for agentic biomedical systems},\n  url={http://dx.doi.org/10.1038/s41587-025-02900-9},\n  urldate = {2025-11-06},\n …","publisher":{"name":"Darius Schaub, Malte Kuehl","url":null},"homepage":"https://anndata-mcp.readthedocs.io/","repository":"https://github.com/biocontext-ai/anndata-mcp","version":"0.2.11","license":"MIT License\n        \n        Copyright (c) 2025, Darius Schaub\n…","protocols":["mcp"],"tags":["mcp"],"pricing":null,"endpoints":[{"url":"pypi:anndata-mcp","type":"package_pypi","auth":null,"probeable":false}],"skills":null,"tools":null,"extra":null,"attribution":{"kind":"pypi","name":"pypi","license":"pypi","repoUrl":"pypi","summary":"pypi","version":"pypi","description":"pypi","homepageUrl":"pypi","publisherName":"pypi"}},"derived":{"capabilities":[{"slug":"dev.version-control","name":"Version Control","confidence":0.745,"provenance":"derived"}],"categories":["dev"],"language":"en"},"observed":{"status":"unknown","statusReason":"Distributed as a package to run locally; no network endpoint to check.","lastOkAt":null,"lastProbedAt":null,"statusComputedAt":null,"reliability30d":null,"latestObservations":[],"tools":null,"package":{"name":"anndata-mcp","registry":"pypi","observedAt":"2026-09-09T09:24:50.906Z","publishedAt":"2026-02-27T17:33:29.688932Z","latestVersion":"0.2.11"}},"verification":{"claimed":false,"claimedAt":null,"proofs":[]},"provenance":{"sources":[{"source":"pypi","key":"anndata-mcp","url":"https://pypi.org/project/anndata-mcp/","firstSeenAt":"2026-09-09T09:22:53.631Z","fetchedAt":"2026-09-09T09:22:53.631Z","normalizedAt":"2026-09-09T09:22:53.631Z"}]},"firstSeenAt":"2026-09-09T09:22:53.631Z","updatedAt":"2026-09-09T09:24:50.906Z"}